as_phyloseq() returns a phyloseq object given a tidytacos object.
Usage
as_phyloseq(ta, sample = sample, taxon = taxon_id)
Arguments
- ta
A tidytacos object.
- sample
The sample names required for a phyloseq object. Default is
"sample" column of the sample table of the tidytacos object.
- taxon
The taxon names required for a phyloseq object. Default is the
"taxon_id" column in the taxon table of the tidytacos object.
Details
This function will convert a tidytacos object into a phyloseq object for
alternative processing using the phyloseq package. To convert from a phyloseq
object to a tidytacos object use from_phyloseq().
