Write the sequences of the taxa table to a fasta file

Uses the taxon_col and sequence_col columns to write the sequences into a fasta file per taxon.

Usage

to_fasta(ta, filename = "asvs.fasta", taxon_col = taxon_id, seq_col = sequence)

Arguments

ta

A tidytacos object.

filename

The name of the resulting biom table file, defaults to 'asvs.fasta'.

taxon_col

The name of the column in the taxa table which is to be used as id for the sequences (taxon_id by default).

seq_col

The name of the sequence column in the taxa table (sequence by default).

See also

Other export-methods: as_phyloseq(), to_biom(), write_tidytacos()