Write the counts of the tidytacos object to a biom file

Uses taxon_id and sample_id columns to create a dense biom file (v1, json). By default this is on ASV/OTU level. To do it at any other taxonomy level, one first needs to aggregate the taxa.

Usage

to_biom(ta, filename = "asvs.biom")

Arguments

ta

A tidytacos object.

filename

The name of the resulting biom table file, defaults to 'asvs.biom'.

See also

Other export-methods: as_phyloseq(), to_fasta(), write_tidytacos()