Creates an interactive ordination plot of the beta diversity of the samples in the tidytacos object. This can be used to gauge the similarity between samples.
Usage
tacoplot_ord_ly(
ta,
x = NULL,
samplenames = sample_id,
ord = "pcoa",
dims = 2,
distance = "bray",
stat.method = NULL,
palette = NULL,
title = NULL,
...
)Arguments
- ta
A tidytacos object.
- x
A string, representing the column name used to color the sample groups on.
- samplenames
the column in the sample table with the samplenames, defaults to sample_id.
- ord
the ordination technique to use. Choice from pcoa, tsne and umap.
- dims
the amount of dimensions to plot, 2 or 3.
- distance
the distance algorithm to use, see
vegan::vegdist().- stat.method
the statistic to print on the figure, choice from mantel and anosim.
- palette
A vector of colors, used as the palette for coloring sample
- title
a string to display as title of the plot. groups.
- ...
Extra arguments to pass to the add_ord function.