Generate a compositional differential abundance plot

This function returns a plot to visualize differential abundance of taxa between conditions, compared to all other taxa as references. These differential abundances should already have been calculated with add_codifab(). Taxa that have a relatively high number of significantly different ratios, can be considered more abundant in one condition versus the other.

Usage

tacoplot_codifab(ta, diffabun_var)

Arguments

ta

A tidytacos object.

diffabun_var

The variable with differential abundances in the taxon_pair table.

Value

A ggplot object

Details

Significance of tests is determined by capping the false discovery rate at 10%, using the method of Benjamini and Yekutieli, which is developed for non-independent tests. See p.adjust.

See also

Other codifab-functions: add_codifab()