Add average relative abundances to taxa table

add_mean_rel_abundance() adds mean relative abundance values for each taxon to the taxa table, overall or per sample group.

Usage

add_mean_rel_abundance(ta, condition = NULL, test = NULL)

Arguments

ta

A tidytacos object.

condition

A condition variable (character).

test

Differential abundance test to perform.

Value

A tidytacos object

Details

If condition is specified, the mean relative abundances will be calculated separately for each group defined by the condition variable. This variable should be present in the sample table.

If condition is specified, differential abundance testing can be performed by setting the test argument. Options are NULL (default), "wilcox" or "t-test".

See also

Other taxa-modifiers: add_prevalence(), add_taxon_name(), add_taxon_name_color()